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Generates a taxonomy file for AMR count table

Source: R/generate_amr_taxonomy.R
generate_amr_taxonomy.Rd

Generates a taxonomy file for AMR count table

Arguments

amr.count.table

count of AMR genes with CVTERMID in the first row and samples on columns

verbose

TRUE or FALSE: whether to keep all columns of AMR gene information or not. Default FALSE.

Value

data table of taxonomy of AMR genes in count table

Examples

if (FALSE) {
generate_amr_taxonomy(amr.count.table = amr.count.table, verbose = FALSE)
}