Skip to contents

CARD 3.1.4 and 1.1.3 aro_index hand curated and combine

Source: R/data.R
CARD_taxonomy.Rd

A dataset with information on CARD genes in the 3.1.4 and 1.13 data releases The variables are as follows:

Usage

data(CARD_taxonomy)

Format

A data frame with 3385 rows and 13 variables

Source

https://card.mcmaster.ca/download

Details

  • ARO Accession. ARO Accession (3000005--3005385)

  • CARDversion. If the data came from 3.1.4 or 1.1.3 (3.1.3, hand-added 1.1.3)

  • CVTERMID. CV TERM ID (36014--43745)

  • Model Sequence ID.

  • Model ID.

  • Model Name.

  • ARO Name.

  • Protein Accession.

  • DNA Accession.

  • AMR Gene Family.

  • Drug Class.

  • Resistance Mechanism.

  • mutation-associated. if the gene is mutation associated